National COVID-19 activities
National genomics reporting
Using SARS-CoV-2 sequences from across jurisdictions, the CDGN AusTrakka National Analysis Team currently provide monthly Australian SARS-CoV-2 Genomic Epidemiology Surveillance reports to the Australian Government Department of Health.
Translational research
The Communicable Diseases Genomics Network are facilitating research into developing further understanding of the behaviour, spread and evolution of SARS-CoV-2, using the precision of next-generation sequencing technology.
Variants of Concern
In Australia and many other countries, genomic sequencing is being used to identify variants of concern (for example, in travellers returning from overseas), so that public health authorities can put measures in place to prevent any spread into the community.
AusTrakka
The national platform providing a central, secure and private online location to share, store, analyse and view aggregated national and jurisdictional data, permitting access to real-time analysis of integrated pathogen genomic data for public health across Australia.
SARS-CoV-2 whole-genome sequencing
Communicable Diseases Genomics Network members are working together to develop protocols and processes that can support and enable national COVID-19 pathogen genomics and enhance surveillance activities across jurisdictions.
Latest COVID-19 news
We are also increasingly hearing about new Omicron sub-variants with names such as BA.2, BA.4 and now BA.5. The concern is these sub-variants may lead to people becoming reinfected, leading to another rise in cases.
We are also increasingly hearing about new Omicron sub-variants with names such as BA.2, BA.4 and now BA.5. The concern is these sub-variants may lead to people becoming reinfected, leading to another rise in cases.
University of Melbourne Associate Professor Torsten Seemann has won the World Health Organization (WHO) Western Pacific Innovation Challenge for his work leading the development of AusTrakka, Australia’s national pathogen genomics surveillance platform.
Published in Nature Communications, researchers behind AusTrakka outline how the platform has facilitated rapid data sharing, democratised access to computational and bioinformatic resources and expertise, and achieved national real-time genomic surveillance.
The latest COVID-19 variant, Omicron, has sparked international travel bans, stricter quarantine and a lot of “hype” worldwide – but we still have a lot to learn about the mutation
The Pathogen Genomics in Public HeAlth Surveillance Evaluation (PG-PHASE) Framework published in Genome Medicine, uses an adaptable, whole-of-system approach towards understanding the utility of pathogen genomics and whole-genome sequencing (WGS) in disease control and measuring the impact on public health processes and outcomes.
The Communicable Diseases Genomic Network (CDGN) co-chair Professor Ben Howden, featured on ABC Radio National’s Sunday Extra with Julian Morrow to discuss the important role genomic sequencing has played in the COVID-19 pandemic response.
It’s been widely publicised that the variant of SARS-CoV-2 associated with Melbourne’s outbreak is the B.1.617 variant. What do we know about it? Is it more transmissible?
Genome sequencing has been around for decades and has become faster and cheaper in more recent years. But how is it currently being used across the world in the fight against the COVID-19 pandemic?
Dr Clare Sloggett, Doherty Institute, recently presented a webinar on AusTrakka, hosted by Australian BioCommons.